Package: pARI 1.1.2

pARI: Permutation-Based All-Resolutions Inference

Computes the All-Resolution Inference method in the permutation framework, i.e., simultaneous lower confidence bounds for the number of true discoveries. <doi:10.1002/sim.9725>.

Authors:Angela Andreella [aut, cre]

pARI_1.1.2.tar.gz
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pARI_1.1.2.tgz(r-4.4-x86_64)pARI_1.1.2.tgz(r-4.4-arm64)pARI_1.1.2.tgz(r-4.3-x86_64)pARI_1.1.2.tgz(r-4.3-arm64)
pARI_1.1.2.tar.gz(r-4.5-noble)pARI_1.1.2.tar.gz(r-4.4-noble)
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pARI.pdf |pARI.html✨
pARI/json (API)
NEWS

# Install 'pARI' in R:

install.packages('pARI', repos = c('https://angeella.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/angeella/pari/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

On CRAN:

ari cluster-map copes discoveries fmri fsl permutation selective-inference simultaneous-confidence-bounds spm

4.78 score 4 stars 1 packages 7 scripts 183 downloads 13 exports 7 dependencies

Last updated 3 months agofrom:285e7b0587. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 05 2024
R-4.5-win-x86_64	OK	Nov 05 2024
R-4.5-linux-x86_64	OK	Nov 05 2024
R-4.4-win-x86_64	OK	Nov 05 2024
R-4.4-mac-x86_64	OK	Nov 05 2024
R-4.4-mac-aarch64	OK	Nov 05 2024
R-4.3-win-x86_64	OK	Nov 05 2024
R-4.3-mac-x86_64	OK	Nov 05 2024
R-4.3-mac-aarch64	OK	Nov 05 2024

Exports:criticalVector dI lambdaOpt map_TDP pARI pARIbrain pARIgene permTest plotNullDistribution signTest simulateData simulateSpatialData Statmap

Dependencies:ARIbrain hommel matrixStats plyr Rcpp RcppArmadillo RNifti

intro

Rendered fromintro.Rmdusingknitr::rmarkdownon Nov 05 2024.

Last update: 2024-09-05
Started: 2024-09-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Critical vector	criticalVector
Lower bound for the number of true discoveries	dI
Lambda calibration	lambdaOpt
True Discovery Proportion brain map	map_TDP
Permutation-based All-Resolutions Inference	pARI
Permutation-based All-Resolutions Inference for brain imaging.	pARIbrain
Permutation-based All-Resolutions Inference for Gene Expression Data	pARIgene
Permutation Test	permTest
Plot permutation p-values distribution	plotNullDistribution
Permutatation-based one-sample t-tests	signTest
simulate normal distributed data	simulateData
simulate normal distributed data	simulateSpatialData
Create Statistical Parametric Mapping (SPM)	Statmap