{ "_id": "6a0f74d7acfb0bcc41c6127d", "Package": "pARI", "Type": "Package", "Title": "Permutation-Based All-Resolutions Inference", "Version": "1.1.3", "Date": "2025-09-23", "Authors@R": "c(person(given=\"Angela\", family=\"Andreella\", comment=c(\"Main author\", ORCID = \"0000-0002-1141-3041\"), email=\"angela.andreella@unive.it\", role=c(\"aut\", \"cre\")))", "Description": "Computes the All-Resolution Inference method in the\npermutation framework, i.e., simultaneous lower confidence\nbounds for the number of true discoveries.\n.", "License": "GPL (>= 2)", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Language": "en-US", "BugReports": "https://github.com/angeella/pARI/issues", "URL": "https://github.com/angeella/pARI", "Repository": "https://angeella.r-universe.dev", "Date/Publication": "2025-09-23 11:04:28 UTC", "RemoteUrl": "https://github.com/angeella/pari", "RemoteRef": "HEAD", "RemoteSha": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-21 06:43:30 UTC", "User": "root" }, "Author": "Angela Andreella [aut, cre] (Main author, ORCID:\n)", "Maintainer": "Angela Andreella ", "MD5sum": "668535e43be7cd8e6923aeb030a87c16", "_user": "angeella", "_type": "src", "_file": "pARI_1.1.3.tar.gz", "_fileid": "102b37e39e1b792bdb085ed6740656530f4b38bb961930a60744dfc68f520899", "_filesize": 215280, "_sha256": "102b37e39e1b792bdb085ed6740656530f4b38bb961930a60744dfc68f520899", "_created": "2026-05-21T06:43:30.000Z", "_published": "2026-05-21T21:10:47.975Z", "_distro": "noble", "_jobs": [ { "job": 77269382395, "time": 144, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7129002677" }, { "job": 77269382186, "time": 131, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7128999162" }, { "job": 77269382571, "time": 145, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7129002698" }, { "job": 77269382336, "time": 143, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7129002191" }, { "job": 77269382557, "time": 188, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7129005876" }, { "job": 77269382384, "time": 291, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7129034470" }, { "job": 77269382366, "time": 196, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7129005928" }, { "job": 77269381854, "time": 311, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7129038676" }, { "job": 77269381510, "time": 270, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7128964681" }, { "job": 77269381467, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7147292568" }, { "job": 77269382169, "time": 214, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7129020647" }, { "job": 77269382375, "time": 127, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7128998370" }, { "job": 77269382437, "time": 141, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7129001616" } ], "_buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/angeella/pari", "_commit": { "id": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "author": "Angela Andreella <36375295+angeella@users.noreply.github.com>", "committer": "Angela Andreella <36375295+angeella@users.noreply.github.com>", "message": "up\n", "time": 1758625468 }, "_maintainer": { "name": "Angela Andreella", "email": "angela.andreella@unive.it", "login": "angeella", "description": "Assistant Professor in Social Statistic at Ca' Foscari University of Venice\n\n", "uuid": 36375295, "orcid": "0000-0002-1141-3041" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.3", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "RNifti", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "ARIbrain", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "angeella", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-39", "n": 2 } ], "_tags": [], "_topics": [ "ari", "cluster-map", "copes", "discoveries", "fmri", "fsl", "permutation", "selective-inference", "simultaneous-confidence-bounds", "spm", "openblas", "cpp" ], "_stars": 4, "_contributors": [ { "user": "angeella", "count": 277, "uuid": 36375295 } ], "_userbio": { "uuid": 36375295, "type": "user", "name": "Angela Andreella", "description": "Assistant Professor in Social Statistic at Ca' Foscari University of Venice\r\n\r\n" }, "_downloads": { "count": 244, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pARI" }, "_devurl": "https://github.com/angeella/pari", "_searchresults": 10, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/pARI.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/angeella/pari", "_realowner": "angeella", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2021-11-17" }, { "version": "1.1.0", "date": "2021-11-18" }, { "version": "1.1.1", "date": "2022-01-10" }, { "version": "1.1.2", "date": "2024-09-06" }, { "version": "1.1.3", "date": "2025-09-23" } ], "_exports": [ "criticalVector", "dI", "lambdaOpt", "map_TDP", "pARI", "pARIbrain", "pARIgene", "permTest", "plotNullDistribution", "signTest", "simulateData", "simulateSpatialData", "Statmap" ], "_help": [ { "page": "criticalVector", "title": "Critical vector", "topics": [ "criticalVector" ] }, { "page": "dI", "title": "Lower bound for the number of true discoveries", "topics": [ "dI" ] }, { "page": "lambdaOpt", "title": "Lambda calibration", "topics": [ "lambdaOpt" ] }, { "page": "map_TDP", "title": "True Discovery Proportion brain map", "topics": [ "map_TDP" ] }, { "page": "pARI", "title": "Permutation-based All-Resolutions Inference", "topics": [ "pARI" ] }, { "page": "pARIbrain", "title": "Permutation-based All-Resolutions Inference for brain imaging.", "topics": [ "pARIbrain" ] }, { "page": "pARIgene", "title": "Permutation-based All-Resolutions Inference for Gene Expression Data", "topics": [ "pARIgene" ] }, { "page": "permTest", "title": "Permutation Test", "topics": [ "permTest" ] }, { "page": "plotNullDistribution", "title": "Plot permutation p-values distribution", "topics": [ "plotNullDistribution" ] }, { "page": "signTest", "title": "Permutatation-based one-sample t-tests", "topics": [ "signTest" ] }, { "page": "simulateData", "title": "simulate normal distributed data", "topics": [ "simulateData" ] }, { "page": "simulateSpatialData", "title": "simulate normal distributed data", "topics": [ "simulateSpatialData" ] }, { "page": "Statmap", "title": "Create Statistical Parametric Mapping (SPM)", "topics": [ "Statmap" ] } ], "_readme": "https://github.com/angeella/pari/raw/HEAD/README.md", "_rundeps": [ "ARIbrain", "hommel", "matrixStats", "plyr", "Rcpp", "RcppArmadillo", "RNifti" ], "_sysdeps": [ { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "intro.Rmd", "filename": "intro.html", "title": "intro", "engine": "knitr::rmarkdown", "headings": [ "Permutation-based All-Resolutions Inference", "Overview of the method", "Usage", "Simulations", "Gene cluster analysis", "fMRI cluster analysis", "Citing pARI" ], "created": "2024-09-05 10:21:20", "modified": "2024-09-05 11:03:18", "commits": 2 } ], "_score": 4.778151250383644, "_indexed": true, "_nocasepkg": "pari", "_universes": [ "angeella" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.3", "date": "2026-05-21T06:46:00.000Z", "distro": "noble", "arch": "aarch64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "77ba6401951f88eff5f4d95a4c08e5a8bc6476d9c7480f6c7681d682506633a4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.7.0", "os": "linux", "version": "1.1.3", "date": "2026-05-21T06:45:49.000Z", "distro": "noble", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "12744c67b3050d89ba417db77898873023b9e0ecbda08bfa6f4fa5ca70296413", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "linux", "version": "1.1.3", "date": "2026-05-21T06:45:58.000Z", "distro": "noble", "arch": "aarch64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "9f78d0f1775926b00647436e0ddbcfdd5bcc5f9744518c6303ff09df3d0de1da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "linux", "version": "1.1.3", "date": "2026-05-21T06:46:08.000Z", "distro": "noble", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "472d2259ddd2d4a9168422952a4164bde103c43bfa5e1bf52a3b519f1eb3f57c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.5.3", "os": "mac", "version": "1.1.3", "date": "2026-05-21T06:46:23.000Z", "arch": "aarch64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "351cd13be9d9527503f86d08d1567848beefa15761f3c3def6de48f693035086", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.5.3", "os": "mac", "version": "1.1.3", "date": "2026-05-21T06:47:37.000Z", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "c998b3dfead3644592aeb718c74214aa1c4ce0ef1f1e8110c7e4da1e27c84021", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "mac", "version": "1.1.3", "date": "2026-05-21T06:46:19.000Z", "arch": "aarch64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "812582627594b44f79101430c3373eb709951e769f00f1860550a5eaf273a4e3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "mac", "version": "1.1.3", "date": "2026-05-21T06:47:56.000Z", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "fd9c53e833e4ef257f2bf4263608352cc71ff76d6415c8422b11183fd8ddb413", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.3", "date": "2026-05-21T21:10:00.000Z", "arch": "emscripten", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "ce2e801eebbf5a16af4dc4c782c4f1eb41af5b887b1c0f76394655fe5cfc67fd", "status": "success", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.7.0", "os": "win", "version": "1.1.3", "date": "2026-05-21T06:46:05.000Z", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "2f831072f543aecae1d7b7153cb706e28cf7fee0b32bd92b66e25c0446df146d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.5.3", "os": "win", "version": "1.1.3", "date": "2026-05-21T06:45:11.000Z", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "79fe5f400d75ab82b4bbb4f03fe89c24cb825a56cc64354ce0ae711e7944b728", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" }, { "r": "4.6.0", "os": "win", "version": "1.1.3", "date": "2026-05-21T06:45:24.000Z", "arch": "x86_64", "commit": "e2d6b7db29f8d89769ec9d5bac19c11413b4439e", "fileid": "62a77bf625ed187ff04aac2aaf788e970d65911c3e36ed96fa4a3e014aecb5ac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/angeella/actions/runs/26209895797" } ] }